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Publications

 

2019:

      Review:  Madduru D, Ijaq J, Dhar S, Sarkar S, Poondla N, Das PS, Vasquez S, Suravajhala P. Systems Challenges of Hepatic Carcinomas: A Review. J Clin Exp Hepatol. 2019 Mar-Apr;9(2):233-244

Methodology: Ijaq J, Malik G, Kumar A, Das PS, Meena N, Bethi N, Sundararajan VS, Suravajhala P. A model to predict the function of hypothetical proteins through a nine-point classification scoring schema.  BMC Bioinformatics. 2019 Jan 8;20(1):14.

 

2018:

  • Commentary Preprint: Das PS, Poddar R, Sarkar S, Megha M, Sundararajan VS, Nallapeta S, Reddy PVV, Valadi JK, Varadwaj PK, Singh TR, Suravajhala P. (2018) Twelve years of BIOinformatics CLUb for Experimenting Scientists (Bioclues) PeerJ Preprints6:e26503v1. Link.

2017:

  • Research:  M.Nagaraju,Palakolanu SudhakarReddy, S.Anil Kumar,AnujKumar,PrashanthSuravajhala,AltafAli,Rakesh K.Srivastav, P.B.Kavi Kishora and D Manohar RaoGenome-wide in silico analysis of dehydrins in Sorghum bicolor, Setaria italica and Zea mays and quantitative analysis of dehydrin gene expressions under abiotic stresses in Sorghum bicolor. Plant Gene. 13: 64-75. Link

2016:

2015:

  • Research Commentary:  Deepti Chachra, Pushpinder Kaur, Prasad Siddavatam,  Prashanth Suravajhala and Hari Mohan Saxena. On genome annotation of Brucellaphage Gadvasu (BpG): discovery of ORFans for integrated systems biology approaches. Syst Synth Biol. 2015 Dec;9(Suppl 1):57-62..  Link
  • Editorial: Prashanth Suravajhala, Alfredo Benso and Jayaraman Valadi. (Challenges in characterizing the uncharacterized) Annotation and curation of uncharacterized proteins: systems biology approaches. Front Genet. 2015 Jun 30;6:224. Link
  • Research Commentary:  Prashanth Suravajhala and Tiratha Raj singh. Is HNF4A a candidate to study zinc finger protein slug? International Journal of Bioinformatics Research and Applications 11(4):366-373 Link
  • Review Article:  Johny Ijaq, Mohanalatha Chandrasekharan, Rajdeep Poddar, Neeraja Bethi and Vijayaraghava S. Sundararajan (2015) Annotation and curation of uncharacterized proteins- challenges. Front. Genet., 31 March 2015 | Link
  • Review Article:  Anil Kumar S, Hima Kumari P, Shravan Kumar G, Mohana Latha C and PB Kavi Kishor. Osmotin: a plant sentinel and a possible agonist of mammalian adiponectin.  Plant Sci. Link
  • Research Article:  Sai Kumar Kompelli, Venkata Shiva Prasad Kompelli, Chandana Enjala and Prashanth Suravajhala. Genome-wide identification of miRNAs in pigeonpea (Cajanus cajan ).  Link
  • Protocol: Prashanth Suravajhala and Jeff W Bizzaro. A Conceptual Outline for ‘Omics Experiments Using Bioinformatics Analogies. BioProtocol 2015; 5(3).Link
  • Obituary: Prashanth Suravajhala, Renuka Suravajhala: Brian F C Clark. Current science 01/2015; 108(2):287. Link
  • Perspective: Srikanth Chiliveru, Mahesh Appari and Prashanth Suravajhala. On Brucella pathogenesis: looking for the unified challenge in systems and synthetic biology. Syst Synth Biol. 2015 Jun;9(1-2):73-5. Link

2014:

  • Research Article: PR Shidhi, Prashanth Suravajhala, Aysha Nayeema, Achuthsankar S Nair, Shailja Singh and Pawan K Dhar. Making novel proteins from pseudogenes. Bioinformatics (Oxford). 2014. Link
  • Short Communication: Prashanth Suravajhala, Harsha Vardhan reddy Burri and Arto Heiskanen. Combining aptamers and in silico interaction studies to decipher the function of hypothetical proteins. Eur. Chem. Bull. 2014, 3(8), 809-810. Link
  • Book: PB. Kavi Kishor, Rajib Bandyopadhyay and Prashanth Suravajhala. Agricultural Bioinformatics. Springer Book.June 2014.
  • Database/Webserver: Anil Kumar, P. Hima Kumari, Vijayaraghava Seshadri Sundararajan, Prashanth Suravajhala, Rajaraman Kanagasabai and P. B. Kavi Kishor. PSPDB: Plant Stress Protein Database. Plant Molecular Biology Reporter. February 2014
  • Research Article: Sameera Sastry Panchangam, Nalini mallikarjuna, Pooran M Gaur and Prashanth Suravajhala.   Androgenesis in chickpea: Anther culture and expressed sequence tags derived annotation. Indian Journal of Experimental biology. 52(2): 181-188.
  • Article: Singhania RR, Madduru D, Pappu P, Panchangam S, Suravajhala R and Chandrasekharan M (2014). The Making of the Women in Biology Forum (WiB) at Bioclues. PLoS Comput Biol 10(1): e1003436.
  • Correspondence: Prashanth Suravajhala (2014). Two Freds’ no more: the legacies of two scientists Current Science 106 (1): 9.
  • Book Chapter: Renuka Suravajhala, Rajdeep Poddar, Sivaramaiah Nallapeta and Saif Ullah: In vitro and in silico studies of Xanthine Derivatives: A Mini Review.  Springer:  Agricultural Bioinformatics 2014. 

2013:

Until 2012: