Publications

Please find here all publications of Bioclues in PubMed

2020:

Research: Suravajhala R , Burri HR, Malik B. Selective targeted drug delivery mechanism via molecular imprinted polymers in cancer therapeutics [published online ahead of print, 2020 Jun 22]. Curr Top Med Chem. 2020;10.2174/1568026620666200622150710. doi:10.2174/1568026620666200622150710 . Link.
Research: Katam R, Shokri S, Murthy N, et al. Proteomics, physiological, and biochemical analysis of cross tolerance mechanisms in response to heat and water stresses in soybean. PLoS One. 2020;15(6):e0233905. Published 2020 Jun 5. doi:10.1371/journal.pone.0233905. Link

2019:

Review: Madduru D et al., Systems Challenges of Hepatic Carcinomas: A Review. J Clin Exp Hepatol. 2019 Mar-Apr;9(2):233-244. Link
Methodology: Ijaq J and Malik G et al., A model to predict the function of hypothetical proteins through a nine-point classification scoring schema. BMC Bioinformatics. 2019 Jan 8;20(1):14. Link

2018:

Commentary Preprint: Das PS and Poddar R et al., (2018) Twelve years of BIOinformatics CLUb for Experimenting Scientists (Bioclues) PeerJ Preprints6:e26503v1. Link.

2017:

Research: M.Nagaraju et al., Genome-wide in silico analysis of dehydrins in Sorghum bicolor, Setaria italica and Zea mays and quantitative analysis of dehydrin gene expressions under abiotic stresses in Sorghum bicolor. Plant Gene. 13: 64-75. Link

2016:

Review/Challenges: Iddamalgoda L et al., Data Mining and Pattern Recognition Models for Identifying Inherited Diseases: Challenges and Implications. Front Genet. 2016 Aug 10;7:136. Link
Review: Sameera Panchangam et al., Saffron’omics’: The Challenges of Integrating Omic Technologies. Avicenna Journal of Phytomedicine. In Press. Link
Perspective: Pranathi Pappu et al., Next Generation Sequencing Analysis of Lung Cancer Datasets: A Functional Genomics Perspective. Indian Journal of Cancer. 2016: 53(1):1-7. Link
Research: Sade H et al., Toxicity and tolerance of aluminum in plants: tailoring plants to suit to acid soils. Biometals. 2016 Jan 21. Link

2015:

Research Commentary: Deepti Chachra et al., Syst Synth Biol. 2015 Dec;9(Suppl 1):57-62.. Link

Editorial: Prashanth Suravajhala, Alfredo Benso and Jayaraman Valadi. (Challenges in characterizing the uncharacterized) Annotation and curation of uncharacterized proteins: systems biology approaches. Front Genet. 2015 Jun 30;6:224. Link
Research Commentary: Prashanth Suravajhala and Tiratha Raj singh. Is HNF4A a candidate to study zinc finger protein slug? International Journal of Bioinformatics Research and Applications 11(4):366-373 Link
Review Article: Johny Ijaq et al., (2015) Annotation and curation of uncharacterized proteins- challenges. Front. Genet., 31 March 2015 | Link
Review Article: Anil Kumar S et al., Osmotin: a plant sentinel and a possible agonist of mammalian adiponectin. Plant Sci. Link
Research Article: Sai Kumar Kompelli et al., Genome-wide identification of miRNAs in pigeonpea (Cajanus cajan ). Link
Protocol: Prashanth Suravajhala and Jeff W Bizzaro. A Conceptual Outline for ‘Omics Experiments Using Bioinformatics Analogies. BioProtocol 2015; 5(3).Link
Obituary: Prashanth Suravajhala, Renuka Suravajhala: Brian F C Clark. Current science 01/2015; 108(2):287. Link
Perspective: Srikanth Chiliveru et al., . On Brucella pathogenesis: looking for the unified challenge in systems and synthetic biology. Syst Synth Biol. 2015 Jun;9(1-2):73-5. Link

2014:

Research Article: PR Shidhi et al., Making novel proteins from pseudogenes. Bioinformatics (Oxford). 2014. Link
Short Communication: Prashanth Suravajhala et al., Eur. Chem. Bull. 2014, 3(8), 809-810. Link
Book: PB. Kavi Kishor, Rajib Bandyopadhyay and Prashanth Suravajhala. Agricultural Bioinformatics. Springer Book.June 2014.
Database/Webserver: Anil Kumar, P et al., PSPDB: Plant Stress Protein Database. Plant Molecular Biology Reporter. February 2014
Research Article: Sameera Panchangam et al., . Androgenesis in chickpea: Anther culture and expressed sequence tags derived annotation. Indian Journal of Experimental biology. 52(2): 181-188.
Article: Singhania RR et al., (2014). The Making of the Women in Biology Forum (WiB) at Bioclues. PLoS Comput Biol 10(1): e1003436.
Correspondence: Prashanth Suravajhala (2014). Two Freds’ no more: the legacies of two scientists Current Science 106 (1): 9.
Book Chapter: Renuka Suravajhala et al., Springer: Agricultural Bioinformatics 2014.

2013:

Research Article: Alfredo Benso et al., A combined approach for genome wide protein function annotation/prediction. Proteome Science 2013, 11(Suppl 1):S1
Correspondence: Mohanalatha Chandrasekharan et al., Women Biologists in India: Challenges. Current Science 105 (8): 1034.
Mini Review: Tiratha Raj Singh et al., Challenges in the miRNA research. International Journal of Bioinformatics Research and Applications. 2013: 9(6):576-583.
Book: Prashanth Suravajhala. Your Passport to a career in Bioinformatics. Springer. August 2013.

Until 2012:

Commentary: Silvia Vasquez et al., ISSN 1684-1662.
Research Article: Suravajhala P and Sundararajan VS. A classification scoring schema to validate protein interactors. 2012;8(1):34-9. Epub 2012 Jan 6. Free PMC Article
Database: Bolser DM et al., MetaBase–the wiki-database of biological databases. Nucleic Acids Res. 2012 Jan;40(Database issue):D1250-4. doi: 10.1093/nar/gkr1099. Epub 2011 Dec 1. Free PMC Article
Research Article: Katam R et al., Analysis of peanut leaf proteome.J Proteome Res. 2010 May 7;9(5):2236-54. doi: 10.1021/pr901009n.
Correspondence: Suravajhala P et al., Influence of virtual conferences on bioinformatics in India and developing nations. Current Science 2010.98 (11),1429.
Editorial: Gichora NN et al., Ten simple rules for organizing a virtual conference–anywhere.PLoS Comput Biol. 2010 Feb 26;6(2):e1000650. doi: 10.1371/journal.pcbi.1000650. Free PMC Article
Challenges: Gudimella R et al., Fungome: Annotating proteins implicated in fungal pathogenesis. 2010 Nov 1; 5(5):202-7. Free PMC Article.
Book: Prashanth Suravajhala. Biotoons. Frog Publishers. 2006. Link